Publications in Applied Microbiology

Cao, B., Phurbu, D., Ralaiveloarisoa, A., Liimatainen, K., Niskanen, T., Ramírez-Cruz, V., Bradshaw, A., Dentinger, B., Ramírez-Guillén, F., Cortés-Pérez, A., Guzmán-Dávalos, L., Villalobos-Arámbula, A., Castro-Jauregui, O., Da Silva, P., Day, R., Davoodian, N., Lebel, T., Castellano, M., May, T., et al. (2025). Fungal diversity notes 1919–2016: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity, 132(1), 425-651. https://doi.org/10.1007/s13225-025-00556-z (Original work published 2025)

Wu, M., Bai, Y., Li, Y., Chen, K., Le, J., Li, J., Zhou, C., Agathos, S. N., Zhang, L., Yan, X., & Han, J. (2025). Isochrysis zhanjiangensis exhibits protective effects against metabolic abnormalities induced by high-fat diet in mice. Marine Life Science & Technology, 7(10), 1-20. https://doi.org/10.1007/s42995-025-00320-x (Original work published 2025)

Paola Musella, Lalaymia, I., Rik Verdonck, Jan Colpaert, Quentin Ponette, & Stephan Declerck. (2025). Paxillus involutus enhances drought resistance of Pinus sylvestris seedlings by improving photosynthetic rate and water use efficiency. Paxillus involutus enhances drought resistance of Pinus sylvestris seedlings by improving photosynthetic rate and water use effi, 8(2025), 1574237. https://doi.org/10.3389/ffgc.2025.1574237 (Original work published 2025)

Wang, N., Lu, J., Wu, J., Zhang, C., Wang, J., Agathos, S. N., & Feng, Y. (2025). A novel Oocystis algal strain enables highly efficient simultaneous biodegradation of bisphenol A and carbon capture in seawater. Frontiers of Environmental Science & Engineering, 19(10), 1-14. https://doi.org/10.1007/s11783-025-2051-2 (Original work published 2025)

Abd-El-Aziz, A., Elnagdy, S. M., Han, J., Mihelič, R., Wang, X., Agathos, S. N., & Li, J. (2025). Bacteria-microalgae interactions from an evolutionary perspective and their biotechnological significance. Biotechnology Advances : research reviews, 82(4), 108591. https://doi.org/10.1016/j.biotechadv.2025.108591 (Original work published 2025)

Brieuc, H., Eléonore, B., Bruno, H., Declerck, S., & Calonne, M. (2025). Fungicide seed treatments delay arbuscular mycorrhizal fungi colonization of winter wheat in the greenhouse, but the effect is attenuated in the field. Mycorrhiza, 35(2), 35:22. https://doi.org/10.1007/s00572-025-01199-3 (Original work published 2025)

Elodie Bossard, Cartabia, A., Lalaymia, I., Nikolaos Tsafantakis, Nektarios Aligiannis, Ioanna Chinou, Declerck, S., & Nikolas Fokialakis. (2025). Innovative Hydroponic Culture of Alkanna tinctoria (L.) Tausch: An Approach Towards Sustainable Extraction Process from Plant Roots. Plants, 14(9), 2987. https://doi.org/10.3390/plants14192987 (Original work published 2025)

Vicent Civera, A., Baptista, P., Berlin, A., Chatzivassiliou, E., Cubero, J., Cunniffe, N., de la Peña, E., Desneux, N., Di Serio, F., Filipiak, A., Hasiow‐Jaroszewska, B., Jactel, H., Landa, B., Maistrello, L., Makowski, D., Milonas, P., Papadopoulos, N. T., Potting, R., Susi, H., et al. (2025). Commodity risk assessment of debarked conifer wood chips fumigated with sulfuryl fluoride from the US. EFSA Journal, 23(1), 1-154. https://doi.org/10.2903/j.efsa.2025.9190 (Original work published 2025)

Dubois, B., Delitte, M., Bragard, C., Legrève, A., Chandelier, A., & Debode, F. (2025). Improving the profiling of wheat bacterial and fungal endophytic communities—a PCR clamping approach. Frontiers in Microbiology, 16(13.3389), 1-14. https://doi.org/10.3389/fmicb.2025.1690976 (Original work published 2025)

July, E., & Gillis, A. (2025). Antiviral defence arsenal across members of the Bacillus cereus group. RAU Scientific Reports, 15(4958), 1-16. https://doi.org/10.1038/s41598-025-86748-8 (Original work published 2025)

Lengrand, S., Dubois, B., Renoz, F., Lebbe, O., Debode, F., & Legrève, A. (2025). Seed-Borne Endophytic Bacteria of Tomato: Dynamic Colonization and Implications in Plant Health. APS Journal online, 1-17. https://doi.org/10.1094/phytofr-01-25-0004-r (Original work published 2025)

Yu, Y., Sun, Y., Li, Y., Zhu, Z., Zhang, L., Li, J., Agathos, S. N., Zhou, C., & Han, J. (2025). Nutrient-mediated changes in growth, biochemical composition, and biosilica deposition in Cyclotella cryptica. Journal of Oceanology and Limnology, 43(5), 1-20. https://doi.org/10.1007/s00343-025-4208-z (Original work published 2025)

Jin, Z., Duan, S., Declerck, S., & Zhang, L. (2025). Bacterial community in the hyphosphere of an arbuscular mycorrhizal fungus differs from that in the surrounding environment and is influenced by hyphal disruption. Mycorrhiza, 35(1), 35:10. https://doi.org/10.1007/s00572-025-01186-8 (Original work published 2025)

Zhang, L., He, Z., Sun, Y., Li, J., Cheng, P., Agathos, S. N., Zhou, C., Zhang, L., & Han, J. (2025). Development of a Mixotrophic Strategy for Efficient Cultivation of a Coccolithophore, Chrysotila roscoffensis. Ocean University of China. Journal, 24(2), 495-505. https://doi.org/10.1007/s11802-025-5840-0 (Original work published 2025)

Li, J., Chisti, Y., Meng, C., Abd-El-Aziz, A., & Agathos, S. N. (2025). Editorial: Microalgae as sustainable food resources: prospects, novel species, bioactive compounds, cultivation process and food processing. Frontiers in Nutrition, 11(1), 1-2. https://doi.org/10.3389/fnut.2024.1543087 (Original work published 2025)

Symanczik, S., Krauss, M., Bodenhausen, N., Declerck, S., Doubell, M., Faist, H., Sessitsch, A., Trognitz, F., & Kundel, D. (2025). Performance of different wheat varieties and their associated microbiome under contrasting tillage and fertilization intensities: Insights from a Swiss long-term field experiment. Soil & Tillage Research, 246, 106328. https://doi.org/10.1016/j.still.2024.106328 (Original work published 2025)

Duan, S., Jin, Z., Zhang, L., & Declerck, S. (2025). Mechanisms of cooperation in the plants-arbuscular mycorrhizal fungi-bacteria continuum. The I S M E Journal : multidisciplinary journal of microbial ecology, 19(1), 1-12. https://doi.org/10.1093/ismejo/wraf023 (Original work published 2025)

Rauch, S., Vitali, F., & Bragard, C. (2025). Occurrence and distribution of Epitrix species in Luxembourg (Coleoptera: Chrysomelidae). Bulletin de la Société des Naturalistes luxembourgeoiS, 127, 191-200. https://doi.org/10.59513/snl.2025.127.191 (Original work published 2025)

Civera, A. V., Baptista, P., Berlin, A., Chatzivassiliou, E., Cubero, J., Cunniffe, N., de la Peña, E., Desneux, N., Di Serio, F., Filipiak, A., Hasiów‐Jaroszewska, B., Jactel, H., Landa, B., Maistrello, L., Makowski, D., Milonas, P., Papadopoulos, N., Potting, R., Susi, H., et al. (2025). Commodity risk assessment of Taxus baccata plants from the UK. EFSA Journal, 23(2), 1-56. https://doi.org/10.2903/j.efsa.2025.9277 (Original work published 2025)

Peduzzi, C., Butchacas, J., Nikis, F., Heiden, N., Merfa, M. V., Martin, M., Roman-Reyna, V., Jacobs, J. M., Koebnik, R., & Bragard, C. (2025). Functional replacement of ancestral antibacterial secretion system in a bacterial plant pathogen. Nature Ecology & Evolution, 9(8), 1393-1404. https://doi.org/10.1038/s41559-025-02773-w (Original work published 2025)

Pesenti, L. (2025). Managing Xylella fastidiosa in Europe: Exploring biocontrol strategies. Plant Health Cases, 2025.0009, 1-15. https://doi.org/10.1079/planthealthcases.2025.0009 (Original work published 2025)

Nikis, F., & et al. (2025). Why is bacterial leaf streak absent from cereal crops in the EU while it is widespread on grass? Is cereal phytobiome playing a role? BLS Research Initiative 4th Annual Symposium, St Paul University, Minnesota, USA.

Peduzzi, C., Butchacas, J., Roman-Reyna, V., Nikis, F., Jacobs, J. M., Koebnik, R., & Bragard, C. (2025). Type IV secretion system drives interbacterial competition in the plant pathogen Xanthomonas. type IV secretion system, Nancy, France.

Peduzzi, C., Butchacas, J., Roman-Reyna, V., Nikis, F., Jacobs, J. M., Koebnik, R., & Bragard, C. (2025). Evolutionary replacement of T4SS by T6SS for antibacterial killing activity in Xanthomonas. 17èmes Plants Bacteria Meeting, Aussois, France.

Peduzzi, C., Butchacas, J., Roman-Reyna, V., Nikis, F., Jacobs, J. M., Koebnik, R., & Bragard, C. (2025). Evolutionary switch from T4SS- to T6SS-mediated bacterial killing strategy in xanthomonads. the Secretion Days conference, Marseille, France.

Genard, M., Bragard, C., Albar, L., Eugénie, H., & Legrève, A. (2025). How the first Polymyxa graminis f. sp. colombiana genome could help unraveling Polymyxa graminis interactions with its host plants and the Rice stripe necrosis virus ? 20ème rencontres de virologie végétale (RVV 2025), centre Paul Langevin, Aussois, France.

Pesenti, L., & Bragard, C. (2025). Assessing the role of Salicaceae xylem endophytes on the establishment and progression of Xylella fastidiosa or Brenneria salicis. 2nd annual conference on microbiome, Lemesos, Cyprus.

Chaumont, F., Gillis, A., & Alsteens, D. (2025). Anoxic conditions alter the receptor landscape and shape phage susceptibility in Staphylococcus aureus. Belgian Society For Viruses of Microbes Symposium 2025; UGent/HoGent, Campus Schoonmeersen, Gent, Belgium.

Pesenti, L., Casarin, N., Hasbroucq, S., Michot, L., Gégoire, J.-C., & Bragard, C. (2025). Microbial Battles in the Xylem: How Endophytes Interact with Xylella fastidiosa in Salicaceae? Xylella Files seminar, Online.

Pesenti, L., & Bragard, C. (2025). Assessing xylem endophytes interplay with Xylella fastidiosa or Brenneria salicis. 76th International Symposium on Crop Protection, Ghent, Belgium.

Ganoudi, M. (2025). Impact of arbuscular mycorrhizal fungi on growth and physiology of argan tree and maize under water stress conditions.

He, J. (2025). Role of mycelial networks of arbuscular mycorrhizal fungi in mobilizing symbiotic N-fixing bacteria.

Lemaigre, S. (2025). Process disturbances in anaerobic digestion : biogas-based detection and chemically induced recovery strategies assessed through metabolic and microbial monitoring.

Henry, G. (2025). Production of medium-chain carboxylates by microbial communities co-fermenting brewer’s spent grain, H2 and CO2.

Richter, F., Calonne, M., van der Heijden, M. G. A., Declerck, S., & Stanley, C. E. (2024). AMF-SporeChip provides new insights into arbuscular mycorrhizal fungal asymbiotic hyphal growth dynamics at the cellular level. Lab On a Chip : miniaturisation for chemistry, physics, biology and bioengineering, 24(7), 1930-1946. https://doi.org/10.1039/d3lc00859b (Original work published 2024)

Ben Zineb, A., Zakraoui, M., Bahlouli, I., Karray, F., Ben Salem, A., Mliki, A., Declerck, S., & Gargouri, M. (2024). Differential recruitment of root bacterial community by inoculated inland spiny and spinless cactus in response to salinity stress. Rhizosphere, 32, 100984. https://doi.org/10.1016/j.rhisph.2024.100984 (Original work published 2024)

Abd-El-Aziz, A., Li, J., Fouda, M. M. G., Sharaby, C. M., Zhang, X., Ma, N., Agathos, S. N., & Abd-El-Aziz, A. S. (2024). Advances in nanoarchitectonics of metal-organic frameworks and metal-/metalloid-containing nanomaterials for antibacterial and antifungal applications. Applied Materials Today, 40(5), 102335. https://doi.org/10.1016/j.apmt.2024.102335 (Original work published 2024)

Brienza, F., Cannella, D., Montesdeoca Espin, D., Cybulska, I., & Debecker, D. (2024). A guide to lignin valorization in biorefineries: traditional, recent, and forthcoming approaches to convert raw lignocellulose into valuable materials and chemicals. RSC Sustainability, 2(1), 37-90. https://doi.org/10.1039/d3su00140g (Original work published 2024)

Fang, J., Sun, Y., Zhu, Z., Li, J., Cheng, P., Agathos, S. N., Fu, Y., Zhang, L., Zhou, C., & Han, J. (2024). Algae-bacteria consortia promotes the cell growth of marine microalgae Phaeodactylum tricornutum and Chrysotila roscoffensis. Algal Research, 80(103535), 103535. https://doi.org/10.1016/j.algal.2024.103535 (Original work published 2024)

Zhao, Y., Sun, Y., Zhu, Z., Li, Y., Zhang, L., Li, J., Agathos, S. N., Zhou, C., & Han, J. (2024). Effects of salinity and temperature on growth performance, biochemical composition, and biosilification process of Cyclotella cryptica. Algal Research, 84(12), 103751. https://doi.org/10.1016/j.algal.2024.103751 (Original work published 2024)

Zhu, Z., He, Z., Li, J., Zhou, C., Li, Y., Zhang, L., Li, X., Agathos, S. N., & Han, J. (2024). An axenic strain reveals the responses of Phaeodactylum tricornutum to external organic carbon. Journal of Oceanology and Limnology, 42(3), 1-13. https://doi.org/10.1007/s00343-024-3251-5 (Original work published 2024)

Mamun, A. A., Neumann, G., Moradtalab, N., Ahmed, A., Dupuis, B., Darbon, G., Nawaz, F., Declerck, S., Mai, K., Vogt, W., Ludewig, U., & Weinmann, M. (2024). Microbial Consortia Versus Single-Strain Inoculants as Drought Stress Protectants in Potato Affected by the Form of N Supply. Horticulturae, 10(1), 102. https://doi.org/10.3390/horticulturae10010102 (Original work published 2024)

Bastogne, B., Buysens, C., Schtickzelle, N., Lalaymia, I., & Declerck, S. (2024). The systemic herbicide glyphosate affects the sporulation dynamics of Rhizophagus species more severely than mechanical defoliation or the contact herbicide diquat. Mycorrhiza, 1-14. https://doi.org/10.1007/s00572-024-01166-4 (Original work published 2024)

Verhaegen, M., Mahillon, J., Caulier, S., Mingeot-Leclercq, M.-P., & Bragard, C. (2024). Data collection on antibiotics for control of plant pathogenic bacteria. EFSA supporting publications, 21(1), 1-195. https://doi.org/10.2903/sp.efsa.2024.en-8522 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Calepitrimerus baileyi. EFSA Journal, 22(5), 1-21. https://doi.org/10.2903/j.efsa.2024.8804 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Cenopalpus irani. EFSA Journal, 22(6), 1-21. https://doi.org/10.2903/j.efsa.2024.8833 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Monema flavescens. EFSA Journal, 22(7), 1-26. https://doi.org/10.2903/j.efsa.2024.8831 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Lepidosaphes malicola. EFSA Journal, 22(3), 1-21. https://doi.org/10.2903/j.efsa.2024.8665 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Shirahoshizo flavonotatus. EFSA Journal, 22(5), 1-21. https://doi.org/10.2903/j.efsa.2024.8805 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Eulecanium giganteum. EFSA Journal, 22(4), 1-23. https://doi.org/10.2903/j.efsa.2024.8666 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Garella musculana. EFSA Journal, 22(3), 1-25. https://doi.org/10.2903/j.efsa.2024.8646 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Diaphania indica. EFSA Journal, 22(5), 1-28. https://doi.org/10.2903/j.efsa.2024.8806 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Civera, A. V., Yuen, J., Zappalà, L., et al. (2024). Commodity risk assessment of Cornus alba and Cornus sanguinea plants from the UK. EFSA Journal, 22(3), 1-86. https://doi.org/10.2903/j.efsa.2024.8657 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Zappalà, L., Lucchi, A., et al. (2024). Commodity risk assessment of Prunus avium plants from United Kingdom. EFSA Journal, 22(7), 1-110. https://doi.org/10.2903/j.efsa.2024.8836 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Pyrrhoderma noxium. EFSA Journal, 22(3), 1-43. https://doi.org/10.2903/j.efsa.2024.8667 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Malacosoma parallela. EFSA Journal, 22(1), 1-20. https://doi.org/10.2903/j.efsa.2024.8549 (Original work published 2024)

Morandini, L., Caulier, S., Bragard, C., & Mahillon, J. (2024). Bacillus cereus sensu lato antimicrobial arsenal: An overview. Microbiological Research, 283, 127697. https://doi.org/10.1016/j.micres.2024.127697 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., et al. (2024). Pest categorisation of Coniella castaneicola. EFSA Journal, 22(7), 1-26. https://doi.org/10.2903/j.efsa.2024.8890 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Zappalà, L., Di Serio, F., et al. (2024). Commodity risk assessment of plants of 12 selected Prunus species from Moldova. EFSA Journal, 22(3), 1-50. https://doi.org/10.2903/j.efsa.2024.8647 (Original work published 2024)

Nihorimbere, G., Alleluya Korangi, V., Nimbeshaho, F., Nihorimbere, V., Legrève, A., & Ongena, M. (2024). Bacillus-based biocontrol beyond chemical control in central Africa: the challenge of turning myth into reality. Frontiers of Plant Science, 15(1), 1-44. https://doi.org/10.3389/fpls.2024.1349357 (Original work published 2024)

Oreiro, E. G., Samils, B., Kildea, S., Heick, T., Hellin, P., Legrève, A., Rodemann, B., Berg, G., Jørgensen, L. N., Friberg, H., Berlin, A., Zhan, J., & Andersson, B. (2024). DMI fungicide resistance in Zymoseptoria tritici is unlinked to geographical origin and genetic background: a case study in Europe. Pest Management Science, 85(2), 1103-1112. https://doi.org/10.1002/ps.8514 (Original work published 2024)

Pesenti, L. (2024). Bacterial Threat to Willows: Understanding the Epidemiology of Brenneria salicis. Plant Health Cases, 2024(2024), 1-8. https://doi.org/10.1079/planthealthcases.2024.0029 (Original work published 2024)

Anckaert, A., Declerck, S., Poussart, L.-A., Lambert, S., Helmus, C., Boubsi, F., Steels, S., Argüelles-Arias, A., Calonne, M., & Ongena, M. (2024). The biology and chemistry of a mutualism between a soil bacterium and a mycorrhizal fungus. Current Biology, 34, 1-17. https://doi.org/10.1016/j.cub.2024.09.019 (Original work published 2024)

Darbon, G., Declerck, S., Riot, G., Doubell, M., & Dupuis, B. (2024). Inoculation and tracking of beneficial microbes reveal they can establish in field-grown potato roots and decrease blemish diseases. Biology and Fertility of Soils, 60(5), 699-712. https://doi.org/10.1007/s00374-024-01822-z (Original work published 2024)

Cornet, L., Lupo, V., Declerck, S., & Baurain, D. (2024). Evaluation of Genomic Contamination Detection Tools and Influence of Horizontal Gene Transfer on Their Efficiency through Contamination Simulations at Various Taxonomic Ranks. Applied Microbiology, 4(1), 124-132. https://doi.org/10.3390/applmicrobiol4010009 (Original work published 2024)

He, J., Zhang, L., Van Dingenen, J., Desmet, S., Goormachtig, S., Calonne, M., & Declerck, S. (2024). Arbuscular mycorrhizal hyphae facilitate rhizobia dispersal and nodulation in legumes. The I S M E Journal : multidisciplinary journal of microbial ecology, 18(1), 1-14. https://doi.org/10.1093/ismejo/wrae185 (Original work published 2024)

Li, J., Agathos, S. N., & Gao, Z. (2024). Editorial: Emerging trends in genetic engineering of microalgae. Frontiers in Bioengineering and Biotechnology, 12(1403711), 1403711. https://doi.org/10.3389/fbioe.2024.1403711 (Original work published 2024)

Zhao, Y., Rodić, N., Liaskos, M., Assimopoulou, A. N., Lalaymia, I., & Declerck, S. (2024). Effects of fungal endophytes and arbuscular mycorrhizal fungi on growth of Echium vulgare and alkannin/shikonin and their derivatives production in roots. Fungal Biology, 128(1), 1607-1615. https://doi.org/10.1016/j.funbio.2023.12.004 (Original work published 2024)

Jin, Z., Jiang, F., Wang, L., Declerck, S., Feng, G., & Zhang, L. (2024). Arbuscular mycorrhizal fungi and Streptomyces: brothers in arms to shape the structure and function of the hyphosphere microbiome in the early stage of interaction. Microbiome, 12(12:83), 1-20. https://doi.org/10.1186/s40168-024-01811-2 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Commodity risk assessment of Tilia cordata and Tilia platyphyllos plants from the UK. EFSA Journal, 22(5), 1-31. https://doi.org/10.2903/j.efsa.2024.8803 (Original work published 2024)

Barhebwa Balangaliza, F., Li, Z., Bragard, C., Vanlauwe, B., & Delvaux, B. (2024). Is silicon beneficial for cassava (Manihot esculenta Crantz)? Plant and Soil : international journal on plant-soil relationships, 500, 623-643. https://doi.org/10.1007/s11104-024-06506-z (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Popillia quadriguttata. EFSA Journal, 22(6), 1-24. https://doi.org/10.2903/j.efsa.2024.8830 (Original work published 2024)

Verhaegen, M., Mahillon, J., Caulier, S., Mingeot-Leclercq, M.-P., & Bragard, C. (2024). Data collection on antibiotics for control of plant pathogenic bacteria. EFSA supporting publications, 21(1), 1-195. https://doi.org/10.2903/sp.efsa.2024.en-8522 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Ceroplastes rubens. EFSA Journal, 22(7), 1-34. https://doi.org/10.2903/j.efsa.2024.8888 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Civera, A. V., Yuen, J., Zappalà, L., et al. (2024). Pest risk assessment of African Leucinodes species for the European Union. EFSA Journal, 22(4), 1-57. https://doi.org/10.2903/j.efsa.2024.8739 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., van der Werf, W., Yuen, J., Zappalà, L., et al. (2024). Risk assessment of Retithrips syriacus for the EU. EFSA Journal, 22(4), 1-81. https://doi.org/10.2903/j.efsa.2024.8741 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Civera, A. V., Yuen, J., Zappalà, L., et al. (2024). Commodity risk assessment of Petunia spp. and Calibrachoa spp. unrooted cuttings from Kenya. EFSA Journal, 22(4), 1-152. https://doi.org/10.2903/j.efsa.2024.8742 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Civera, A. V., Yuen, J., Zappalà, L., et al. (2024). Commodity risk assessment of Sorbus aucuparia plants from the UK. EFSA Journal, 22(6), 1-69. https://doi.org/10.2903/j.efsa.2024.8837 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Civera, A. V., Yuen, J., Zappalà, L., et al. (2024). Commodity risk assessment of Corylus avellana plants from the UK. EFSA Journal, 22(1), 1-21. https://doi.org/10.2903/j.efsa.2024.8495 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Crisicoccus seruratus. EFSA Journal, 22(4), 1-20. https://doi.org/10.2903/j.efsa.2024.8740 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Stefani, E., Thulke, H.-H., Van der Werf, W., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest categorisation of Pratylenchus loosi. EFSA Journal, 22(1), 1-21. https://doi.org/10.2903/j.efsa.2024.8548 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Van der Werf, W., Civera, A. V., Yuen, J., Zappalà, L., et al. (2024). Commodity risk assessment of Ligustrum ovalifolium and Ligustrum vulgare plants from the UK. EFSA Journal, 22(3), 1-78. https://doi.org/10.2903/j.efsa.2024.8648 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Vicent Civera, A., van der Werf, W., Yuen, J., Zappalà, L., Thulke, H.-H., et al. (2024). Risk assessment of Phlyctinus callosus for the EU. EFSA Journal, 22(7), 1-56. https://doi.org/10.2903/j.efsa.2024.8832 (Original work published 2024)

More, S., Bampidis, V., Benford, D., Bragard, C., Hernandez‐Jerez, A., Bennekou, S. H., Koutsoumanis, K., Lambré, C., Machera, K., Mennes, W., Mullins, E., Nielsen, S. S., Schlatter, J., Schrenk, D., Turck, D., Younes, M., Fletcher, T., Greiner, M., Ntzani, E., et al. (2024). Scientific Committee guidance on appraising and integrating evidence from epidemiological studies for use in EFSA’s scientific assessments. EFSA Journal, 22(7), 1-91. https://doi.org/10.2903/j.efsa.2024.8866 (Original work published 2024)

Bragard, C., Baptista, P., Chatzivassiliou, E., Di Serio, F., Gonthier, P., Jaques Miret, J. A., Justesen, A. F., MacLeod, A., Magnusson, C. S., Milonas, P., Navas‐Cortes, J. A., Parnell, S., Potting, R., Reignault, P. L., Stefani, E., Thulke, H.-H., Vicent Civera, A., Yuen, J., Zappalà, L., et al. (2024). Pest risk assessment of Leucinodes orbonalis for the European Union. EFSA Journal, 22(3), 1-108. https://doi.org/10.2903/j.efsa.2024.8498 (Original work published 2024)

Dubois, B., Delitte, M., Lengrand, S., Bragard, C., Legrève, A., & Debode, F. (2024). PRONAME: a user-friendly pipeline to process long-read nanopore metabarcoding data by generating high-quality consensus sequences. Frontiers in bioinformatics, 4, 1-13. https://doi.org/10.3389/fbinf.2024.1483255 (Original work published 2024)

Nimbeshaho, F., Nihorimbere, G., Arias, A. A., Lienard, C., Steels, S., Nibasumba, A., Nihorimbere, V., Legrève, A., & Ongena, M. (2024). Unravelling the secondary metabolome and biocontrol potential of the recently described species Bacillus nakamurai. Microbiology Research, 288, 127841. https://doi.org/10.1016/j.micres.2024.127841 (Original work published 2024)

Le Vourch, V., Decroës, A., Thonon, S., Lienard, C., Van Steenberge, C., Rosillon, D., Lebrun, P., César, V., & Legrève, A. (2024). Spatiotemporal dynamics of Phytophthora infestans airborne inoculum in Belgium. European Journal of Plant Pathology, 1-15. https://doi.org/10.1007/s10658-024-02948-4 (Original work published 2024)

Lengrand, S., Dubois, B., Pesenti, L., Debode, F., & Legrève, A. (2024). Humic substances increase tomato tolerance to osmotic stress while modulating vertically transmitted endophytic bacterial communities. Frontiers of Plant Science, 15(10.3389), 1-14. https://doi.org/10.3389/fpls.2024.1488671 (Original work published 2024)

Lengrand, S., Pesenti, L., Bragard, C., & Legrève, A. (2024). Bacterial endophytome sources, profile and dynamics—a conceptual framework. Frontiers in sustainable food systems, 8, 1-10. https://doi.org/10.3389/fsufs.2024.1378436 (Original work published 2024)

Desmecht, S., Latka, A., Ceyssens, P.-J., Garcia-Pino, A., Gillis, A., Lavigne, R., Lima-Mendez, G., Matthijnssens, J., Vázquez, R., Venneman, J., Wagemans, J., Briers, Y., & Thiry, D. (2024). Meeting Report of the Second Symposium of the Belgian Society for Viruses of Microbes and Launch of the Phage Valley. Viruses, 16(2), 299. https://doi.org/10.3390/v16020299 (Original work published 2024)

Henry, G., Isenborghs, A., Walhain, E., Nicolay, T., Stenuit, B., & Gerin, P. (2024). Enhancing the fermentability of brewer’s spent grains to short- and medium-chain carboxylates through dilute alkaline pretreatment. Biomass Conversion and Biorefinery, 1-14. https://doi.org/10.1007/s13399-024-05508-2 (Original work published 2024)

Cipriani Avila, E. (2024). The Power of Mushrooms: The Chemical Approach to Mycoremediation. II Ecuadorian Congress of Mycology, Loja, Ecuador.

Peduzzi, C., Butchacas, J., Roman-Reyna, V., Nikis, F., Delitte, M., Jacobs, J. M., Koebnik, R., & Bragard, C. (2024). Real-time monitoring of T6SS activity in Xanthomonas translucens. French Network on Xanthomonads (FNX), Noirmoutier, France.

Pesenti, L., & Bragard, C. (2024). Interplay of xylem endophytes - Unravelling their interactions with Xylella fastidiosa and Brenneria salicis in Salix and Populus. International Conference on Plant Pathogenic Bacteria and Biocontrol, Blacksburg, Virginia, USA.

Pesenti, L., & Bragard, C. (2024). Exploring xylem endophytes interplay with Xylella fastidiosa or Brenneria salicis. 75th International Symposium on Crop Protection, Ghent, Belgium.

Gillis, A., Hendriksen, N. B., & Økstad, O. A. (2024). Towards a consensus taxonomy of the Bacillus cereus group of bacteria in the sequencing era. 2024 International Congress on Invertebrate Pathology and Microbial Control (SIP 2024), Vienna, Austria.

Peduzzi, C., Butchacas, J., Roman-Reyna, V., Nikis, F., Delitte, M., Jacobs, J. M., Koebnik, R., & Bragard, C. (2024). Xanthomonas translucens uses Type VI secretion system to mediate interbacterial killing and leaf community fitness. the Bacterial Leaf Streak (BLS) meeting, Columbus (Ohio), USA.

Peduzzi, C., Butchacas, J., Roman-Reyna, V., Nikis, F., Delitte, M., Jacobs, J. M., oebnik, R., & Bragard, C. (2024). Evolution and functional analysis of type IV and VI secretion systems of the phytopathogen Xanthomonas translucens: role of nanomachines in the inter-bacterial warfare on cereals. pathology seminar series spring 2024, Columbus (Ohio), USA (Talk). 15th April 2024.

July, E., & Gillis, A. (2024). The antiviral defence arsenal of the Bacillus cereus group. 10th International Conference on Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis, New Delhi, India.

Økstad, O. A., Hendriksen, N. B., & Gillis, A. (2024). Stepping stones towards a consensus Bacillus cereus group taxonomy in the age of whole genome sequencing. 10th International Conference on Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis, New Delhi, India.

Lengrand, S. (2024). Influence of seed-transmitted endophytic bacteria and humic substances in tomato osmotic stress response.

Delitte, M. (2024). The wheat microbiome and its associated Pseudomonas.

Komagbé, G. (2024). Qualité microbiologique du lait caillé et du Wagashi Gassirè produits au Bénin : état des lieux et pistes d’amélioration.

Nuytten, M. (2024). Deciphering the molecular interactions between myophage receptor binding proteins and their cognate receptors in the Bacillus cereus group.

Verhaegen, M. (2024). Insights into the environmental dimension of antibiotic resistance : a One Health perspective.